Proteomics + Bioinformatics Pipeline

A bioinformatics pipeline for proteomics

A locally deployed command line tool and database for the analysis of protein assays across multiple experimental types and tissues.
The challenge

Our client offers an industry leading proteomics assay for biomarker discovery and development of precision diagnostics. Their customers needed to perform local analyses of the data from their proteomic assays to avoid sharing data to the cloud, for legal and intellectual property reasons. The client needed a stand alone and locally deployed application to reproduce the bioinformatic pipelines for proteomic analysis.

Our Solution

Our team explored the client’s existing code base and developed an application that allowed their users to independently analyze the proteomic results within the user’s private network. Our team collaborated with the client to ensure that all data, previously only available in the cloud, were incorporated into the application. As a part of this development, we created a local database to store analysis data. This new data format reduced duplication, was more compact, and supported legacy functionality; becoming their new standard. This application has been deployed and is in use at leading clinical research sites around the world.

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